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Analyskod (Click to sort ascending)	Beskriving (Click to sort ascending)
VWGDPTR001	SARS-CoV-2 whole genome sequencing of amplicons converted into sequencing ready libraries using DNA Prep Tagmentation.
VWXONTR000	External Oxford Nanopore sequenced virus samples.
MWRNXTR003	Microbial whole genome sequencing. 3 M read pairs.
MWXNXTR003	Microbial whole genome sequencing. 3 M read pairs.
VWGNXTR001	Viral whole genome sequencing (of amplicons). 1 M read pairs.
RMLCUSR800	Ready Made Library, SP flowcell, custom recipe 800 M read pairs.
RMLCUSS160	Ready Made Library, S1 flowcell, custom recipe 1600 M read pairs.
RMLP05R800	Ready Made Library, SP flowcell, PE 2x50, 800 M read pairs.
RMLP15R020	Ready Made Library, PE 2x150, 20 M read pairs.
RMLP15R100	Ready Made Library, PE 2x150, 100 M read pairs.
RMLP15R200	Ready Made Library, PE 2x150, 200 M read pairs.
RMLP15R300	Ready Made Library, PE 2x150, 300 M read pairs.
RMLP15R400	Ready Made Library, PE 2x150, 400 M read pairs.
RMLP15R500	Ready Made Library, PE 2x150, 500 M read pairs.
RMLP15R750	Ready Made Library, PE 2x150, 750 M read pairs.
RMLP15S100	Ready Made Library, PE 2x150, 1000 M read pairs.
RMLP15S125	Ready Made Library, PE 2x150, 1250 M read pairs.
RMLP15S150	Ready Made Library, PE 2x150, 1500 M read pairs.
RMLP15S175	Ready Made Library, PE 2x150, 1750 M read pairs.
RMLP15S200	Ready Made Library, PE 2x150, 2000 M read pairs.
RMLP15S225	Ready Made Library, PE 2x150, 2250 M read pairs.
RMLP15S250	Ready Made Library, PE 2x150, 2500 M read pairs.
RMLP15S275	Ready Made Library, PE 2x150, 2750 M read pairs.
RMLP15S300	Ready Made Library, PE 2x150, 3000 M read pairs.
RMLP15S325	Ready Made Library, PE 2x150, 3250 M read pairs.
RMLP15S350	Ready Made Library, PE 2x150, 3500 M read pairs.
RMLP15S375	Ready Made Library, PE 2x150, 3750 M read pairs.
RMLP15S400	Ready Made Library, PE 2x150, 4000 M read pairs.
RMLP15S425	Ready Made Library, PE 2x150, 4250 M read pairs.
RMLP15S450	Ready Made Library, PE 2x150, 4500 M read pairs.
RMLP15S475	Ready Made Library, PE 2x150, 4750 M read pairs.
RMLP15S500	Ready Made Library, PE 2x150, 5000 M read pairs.
PANKTTR020	Panel-based sequencing, 20 M read pairs.
PANKTTR040	Panel-based sequencing, 40 M read pairs.
PANKTTR060	Panel-based sequencing, 60 M read pairs.
PANKTTR080	Panel-based sequencing, 80 M read pairs.
PANKTTR100	Panel-based sequencing, 100 M read pairs.
PANKTTR200	Panel-based sequencing, 200 M read pairs.
PANWTTR020	Panel-based sequencing using Watchmaker Genomics library prep kit and Twist Biosciences custom bait set, 20 M read pairs. Only for in-house use.
EXOKTTR040	Whole exome sequencing, 40 M read pairs.
EXOKTTR060	Whole exome sequencing, 60 M read pairs.
EXOKTTR100	Whole exome sequencing, 100 M read pairs.
EXOKTTR140	Whole exome sequencing, 140 M read pairs.
EXOKTTR200	Whole exome sequencing, 200 M read pairs.
EXXCUSR000	Analysis of externally sequenced whole exome data.
METLIFR030	Metagenomic sequencing, low input PCR-free library preparation, 30 M read pairs.
METPCFR030	Metagenomic sequencing, 30 M read pairs.
METPCFR050	Metagenomic sequencing, 50 M read pairs.
WGSDPFR020	For internal use only
WGSDPFR140	For internal use only
WGSDPFR400	Whole genome sequencing, Illumina DNA Prep PCR free.
WGSLIFC030	Whole-genome sequencing, low input PCR-free library preparation, 30x coverage.
WGSLIFR400	Whole-genome sequencing, low input PCR-free library preparation, 400 M read pairs.
WGSLIFR500	Whole-genome sequencing, low input PCR-free library preparation. This application tag should only be used when the source of DNA is muscle. 500 M read pairs.
WGSLIFS120	Whole-genome sequencing, low input PCR-free library preparation, 1200 M read pairs.
WGSPCFC030	Whole genome sequencing. 30x coverage.
WGSPCFR010	Whole genome sequencing, 10 M read pairs. Only for in-house use.
WGSPCFR400	Whole-genome sequencing, 400 M read pairs.
WGSPCFR500	Whole-genome sequencing. This application tag should only be used when the source of DNA is muscle. 500 M read pairs.
WGSPCFS120	Whole-genome sequencing, 1200 M read pairs.
WGSWPFR020	Whole-genome sequencing with Watchmaker genomics PCR-free prep, PE 2x150bp, 20 M r-p. Only for in-house use.
WGSWPFR400	Whole-genome sequencing, Watchmaker genomics PCR-free prep, 400 M read pairs. Only for in-house use.
WGXCUSC000	Analysis of externally sequenced whole genome data.
RNADEPR050	RNA sequencing, rRNA depletion, 50 M read pairs.
RNADEPR100	RNA sequencing, rRNA depletion, 100 M read pairs.
RNAPOAR050	RNA sequencing, poly-A capture, 50 M read pairs.
RNAPOAR100	RNA sequencing, poly-A capture, 100 M read pairs.
RNAPOAR400	RNA sequencing, poly-A capture, 400 M read pairs.
RNXCUSR000	Analysis of externally sequenced RNA data.

Analyser

För varje projekt identifierar vi tillsammans de metoder (laborativa och bioinformatiska) som behövs och därefter sätter vi upp analysen. Varje analys definieras med hjälp av en unik analyskod (application tag) som entydigt definierar hur analysen skall utföras. Det är viktigt att rätt kod används i beställningsformuläret.

Följande analyser finns uppsatta och är beställningsbara. Antalet reads kan justeras enligt önskemål och nedan följer exempel på analyser med 100 M läspar för exomprover och 60X/30X för WGS prover. Kontakta oss ifall någon annan typ av analys behövs.