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VWGDPTR001 SARS-CoV-2 whole genome sequencing of amplicons converted into sequencing ready libraries using DNA Prep Tagmentation.
VWXONTR000 Externally sequenced virus samples form Oxford Nanopore sequencing technology to be analyzed with Mutant.
MWRNXTR003 Microbial whole genome sequencing of routine samples. 3 M read pairs. Not available for all customers.
MWXNXTR003 Microbial whole genome sequencing. >175 submitted samples. 3 M read pairs.
VWGNXTR001 Viral whole genome sequencing (of amplicons). 1-48 submitted samples. 1 M read pairs.
VWLNXTR001 Viral whole genome sequencing (of amplicons). >48 submitted samples. 1 M read pairs.
RMLCUSR800 RML
RMLCUSS160 RML
RMLP05R800 RML, NovaSeq SP, sequencing only, PE 2x50, 800 M r-p
RMLP15R100 RML, NovaSeq S4, sequencing only, PE 2x150, 100 M r-p
RMLP15R200 RML, NovaSeq S4, sequencing only, PE 2x150, 200 M r-p
RMLP15R300 RML, NovaSeq S4, sequencing only, PE 2x150, 300 M r-p
RMLP15R400 RML, NovaSeq S4, sequencing only, PE 2x150, 400 M r-p
RMLP15R500 RML, NovaSeq S4, sequencing only, PE 2x150, 500 M r-p
RMLP15R750 RML, NovaSeq S4, sequencing only, PE 2x150, 750 M r-p
RMLP15R825 RML, NovaSeq S4, sequencing only, PE 2x150, 825 M r-p
RMLP15S100 RML, NovaSeq S4, sequencing only, PE 2x150, 1000 M r-p
RMLP15S125 RML, NovaSeq S4, sequencing only, PE 2x150, 1250 M r-p
RMLP15S150 RML, NovaSeq S4, sequencing only, PE 2x150, 1500 M r-p
RMLP15S175 RML, NovaSeq S4, sequencing only, PE 2x150, 1750 M r-p
RMLP15S200 RML, NovaSeq S4, sequencing only, PE 2x150, 2000 M r-p
RMLP15S225 RML, NovaSeq S4, sequencing only, PE 2x150, 2250 M r-p
RMLP15S250 RML, NovaSeq S4, sequencing only, PE 2x150, 2500 M r-p
RMLP15S275 RML, NovaSeq S4, sequencing only, PE 2x150, 2750 M r-p
RMLP15S300 RML, NovaSeq S4, sequencing only, PE 2x150, 3000 M r-p
RMLP15S325 RML, NovaSeq S4, sequencing only, PE 2x150, 3250 M r-p
RMLP15S350 RML, NovaSeq S4, sequencing only, PE 2x150, 3500 M r-p
RMLP15S375 RML, NovaSeq S4, sequencing only, PE 2x150, 3750 M r-p
RMLP15S400 RML, NovaSeq S4, sequencing only, PE 2x150, 4000 M r-p
RMLP15S425 RML, NovaSeq S4, sequencing only, PE 2x150, 4250 M r-p
RMLP15S450 RML, NovaSeq S4, sequencing only, PE 2x150, 4500 M r-p
RMLP15S475 RML, NovaSeq S4, sequencing only, PE 2x150, 4750 M r-p
RMLP15S500 RML, NovaSeq S4, sequencing only, PE 2x150, 5000 M r-p
PALKTTR010 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 10 M read pairs.
PALKTTR020 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 20 M read pairs.
PALKTTR030 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 30 M read pairs.
PALKTTR040 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 40 M read pairs.
PALKTTR050 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 50 M read pairs.
PALKTTR060 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 60 M read pairs.
PALKTTR100 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 100 M read pairs. The order need to include 49 samples or more.
PANKTTR010 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 10 M read pairs.
PANKTTR020 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 20 M read pairs.
PANKTTR030 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 30 M read pairs.
PANKTTR040 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 40 M read pairs.
PANKTTR050 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 50 M read pairs.
PANKTTR060 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 60 M read pairs.
PANKTTR100 Panel-based sequencing using Twist Biosciences custom bait set and with Kapa Hyper Plus library preparation, 100 M read pairs.
EXLKTTR020 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 20 M read pairs.
EXLKTTR040 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 40 M read pairs.
EXLKTTR060 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 60 M read pairs.
EXLKTTR080 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 80 M read pairs.
EXOKTTR020 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 20 M read pairs.
EXOKTTR030 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 30 M read pairs.
EXOKTTR040 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 40 M read pairs.
EXOKTTR060 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 60 M read pairs.
EXOKTTR080 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 80 M read pairs
EXOKTTR100 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 100 M read pairs.
EXOKTTR120 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 120 M read pairs.
EXOKTTR140 Whole exome sequencing using Twist Biosciences core exome bait set and Kapa Hyper Plus library preparation, 140 M read pairs.
EXXCUSR000 Rare Disease analysis of externally sequenced whole exome data. Delivery of results in Scout.
MELLIFR010 Metagenomic sequencing
MELLIFR020 Metagenomic sequencing
MELLIFR030 Metagenomic sequencing
MELNXTR010 Metagenomic sequencing
MELNXTR020 Metagenomic sequencing
MELNXTR030 Metagenomic sequencing
MELPCFR010 Metagenomic sequencing
MELPCFR020 Metagenomic sequencing
MELPCFR030 Metagenomic sequencing
METLIFR010 Metagenomic sequencing
METLIFR020 Metagenomic sequencing
METLIFR030 Metagenomic sequencing
METNXTR010 Metagenomic sequencing
METNXTR020 Metagenomic sequencing
METNXTR030 Metagenomic sequencing
METPCFR010 Metagenomic sequencing
METPCFR020 Metagenomic sequencing
METPCFR030 Metagenomic sequencing
METPCFR050 Metagenomic sequencing
WGLLIFC030 Whole-genome sequencing, PE 2x150, 30x coverage, Low input PCR-free library preparation. Order of 49 or more samples.
WGLLIFS120 Whole-genome sequencing, PE 2x150, 1200 M r-p. 75% of ordered quantity of data is guaranteed. Low input strategy. Order for 49 or more samples.
WGLPCFC030 Whole genome sequencing, 30X coverage. TruSeq PCR free prep. Order of 49 or more samples.
WGLPCFS120 Whole-genome sequencing, PE 2x150, 1200 M r-p. 75% of ordered quantity of data is guaranteed. TruSeq PCR-free prep. Order for 49 or more samples.
WGSLIFC030 Whole-genome sequencing, low input strategy. PE 2x150, 30x coverage
WGSLIFR400 Whole-genome sequencing, PE 2x150, 400 M r-p. 75% of ordered quantity of data is guaranteed. Low input strategy.
WGSLIFR500 Whole-genome sequencing. This application tag should only be used when the source of DNA is muscle. PCR-free library preparation, PE 2x150, 500 M r-p. 75% of ordered quantity of data is guaranteed.
WGSLIFR800 Whole-genome sequencing, PE 2x150, 800 M r-p. 75% of ordered quantity of data is guaranteed. Low input strategy.
WGSLIFS120 Whole-genome sequencing, PE 2x150, 1200 M r-p. 75% of ordered quantity of data is guaranteed. Low input strategy.
WGSPCFC030 Whole genome sequencing, 30X coverage. TruSeq PCR free prep.
WGSPCFR010 Whole genome sequencing, 10M read pairs. TruSeq PCR free prep. Only for in-house use.
WGSPCFR400 Whole-genome sequencing, PE 2x150, 400 M r-p. 75% of ordered quantity of data is guaranteed. TruSeq PCR-free prep.
WGSPCFR500 Whole-genome sequencing. This application tag should only be used when the source of DNA is muscle. PCR-free library preparation, PE 2x150, 500 M r-p. 75% of ordered quantity of data is guaranteed.
WGSPCFR800 Whole-genome sequencing, PE 2x150, 800 M r-p. 75% of ordered quantity of data is guaranteed. TruSeq PCR-free prep.
WGSPCFS120 Whole-genome sequencing, PE 2x150, 1200 M r-p. 75% of ordered quantity of data is guaranteed. TruSeq PCR-free prep.
WGXCUSC000 Rare Disease analysis of externally sequenced whole genome data. Delivery of results in Scout.
RNAPOAR050 RNA seq, poly-A based priming, 50 M read pairs, PE 2x150 bp using NovaSeq.
RNAPOAR075 RNA seq, poly-A based priming, 75 M read pairs, PE 2x150 bp using NovaSeq.
RNAPOAR100 RNA seq, poly-A based priming, 100 M read pairs, PE 2x150 bp using NovaSeq.
RNLPOAR025 RNA seq, poly-A based priming, 25 M read pairs, PE 2x150 bp using NovaSeq, minimum 49 samples
RNLPOAR030 RNA seq, poly-A based priming, 30 M read pairs, PE 2x150 bp using NovaSeq, minimum 49 samples.
RNLPOAR050 RNA seq, poly-A based priming, 50 M read pairs, PE 2x150 bp using NovaSeq, minimum 49 samples.
RNLPOAR075 RNA seq, poly-A based priming, 75 M read pairs, PE 2x150 bp using NovaSeq, minimum 49 samples.
RNLPOAR100 RNA seq, poly-A based priming, 100 M read pairs, PE 2x150 bp using NovaSeq. For orders of 49 samples or more.
RNXCUSR000 Rare Disease analysis of externally sequenced RNA data. Delivery of results as agreed.

Analyser

För varje projekt identifierar vi tillsammans de metoder (laborativa och bioinformatiska) som behövs och därefter sätter vi upp analysen. Varje analys definieras med hjälp av en unik analyskod (application tag) som entydigt definierar hur analysen skall utföras. Det är viktigt att rätt kod används i beställningsformuläret.

Följande analyser finns uppsatta och är beställningsbara. Antalet reads kan justeras enligt önskemål och nedan följer exempel på analyser med 100 M läspar för exomprover och 60X/30X för WGS prover. Kontakta oss ifall någon annan typ av analys behövs.